FLAIR+CT ALEXANDER^EMILY
doneResults
S3: ahi-results/research/flair/d331d2b4/
Open in Slicer
👁 Slicer 1
👁 Slicer 2
👁 Slicer 3
👁 Slicer 4
Click Prepare workspace — volumes are downloaded from S3 and a pre-configured Slicer scene is generated (FLAIR + registered CT ).
No clinical record (NEL or POWNEU) found for MRN 298131.
LINK TO NEL MANUALLY
Enter the patient's Scrawl MRN to link their NEL record.
Pipeline log
Starting pipeline — mode=CT+FLAIR
Downloading FLAIR DICOMs from AHI...
Downloading CT DICOMs from AHI...
Converting FLAIR DICOMs to NIfTI...
FLAIR: /srv/research/flair/d331d2b4/nifti/flair/flair.nii.gz
Converting CT DICOMs to NIfTI...
CT: /srv/research/flair/d331d2b4/nifti/ct/ct.nii.gz
Running ANTs rigid+affine registration (CT → FLAIR space)...
Saved warped CT: /srv/research/flair/d331d2b4/ct_in_flair.nii.gz
Submitting FLAIR to MONAILabel (wmh_fazekas)...
WMH segmentation failed (non-fatal): HTTPConnectionPool(host='127.0.0.1', port=8000): Max retries exceeded with url: /infer/wmh_fazekas?output=all (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f8fdca64910>: Failed to establish a new connection: [Errno 111] Connection refused'))
Uploading results to S3...